PUBLIC_RC1 V4 assessment
MRC-5 — formal assessment
Entity LUNG-ENT-029 · assessment V4|LUNG-ENT-029|REPLICATE_LEVEL
The 13 legacy V1–V3 records remain separate from V4 replicate-level results. Downloads are temporarily unavailable while licensing and distribution metadata are finalized.
Assessment context
- Status
- FORMAL
- PR version
- V4
- Target assignment
- fibroblasts / PRTGT-005; accepted proxy with limitation
- Baseline classification
- PD38wo DMSO vehicle control; no rotenone; accepted under prior user-reported final rule closure; not untreated
- Replication rule
- REPLICATE_LEVEL
- Source
- GSE64553; author-reprocessed GEP_TPM_hUSI.csv; Figshare file 50830860; SHA256 317832c2b7b0de55b5b6c2e4164145feefa2c166cd4733dc0cf37d83d109b70f
- Method and caveat
- Author TPM; GRCh38; GENCODE release 31; ENSG gene IDs; existing PR-only core log2(TPM+1); frozen HPA normal reference SHA256 93a9cddda40e886d2fd85136a531b4525bbb882cf24722091fe9dcf56fe831cc
Replicate-level results
Replicates are shown individually; no expression, rho, rank, or percentile aggregation is performed here.
| Sample | Replicate | Run | rho | Rank | Percentile | Delta rho | Shared genes |
|---|---|---|---|---|---|---|---|
| GSM1574089 | GSM1574089 biological replicate 1 | SRR1736309 | 0.733347 | 3 | 98.693% | -0.0234307265 | 20137 |
| GSM1574090 | GSM1574090 biological replicate 2 | SRR1736310 | 0.740173 | 3 | 98.693% | -0.0225794802 | 20137 |
| GSM1574091 | GSM1574091 biological replicate 3 | SRR1736311 | 0.740120 | 3 | 98.693% | -0.0212014731 | 20137 |