Public Schema V2 · Colon/Intestine Census V1

Caco-2

Intestinal/colonic epithelial — General epithelial · stable entity ID: CI-ENT-039

Provenance and Evidence

Species
Homo sapiens
Tissue origin
COLON_INTESTINE_RELEVANT_SOURCE_CONTEXT; EXACT_SOURCE_IN_EVIDENCE_FIELD
Provenance summary
Cellosaurus colon tumour-line query | https://www.cellosaurus.org/search?query=28683746
Evidence summary
Cellosaurus colon tumour-line query | https://www.cellosaurus.org/search?query=28683746
Identity caveat
NOT_ASSESSED
Public omics readiness
NOT ASSESSED

Relationships

No parent relationship recorded.

Disease Applications

Disease context

Bacterial enteritis

Bacterial enteric infection / host–pathogen interaction

LITERATURE SUPPORTED
Stimulus
Salmonella Typhimurium
Experimental context
Caco-2 + Salmonella Typhimurium
Stimulus parameters
moi: 10–100; exposure duration: 1–4 h; qualification: Published evidence overlaps part of the seed range.

Application purpose

  • Host-pathogen interaction
  • bacterial adhesion/invasion
  • inflammatory response

Evidence summary: Directly supports Caco-2 Salmonella infection for bacterial interaction, host signaling and inflammatory-response readouts. Confluent Caco-2 cells on semipermeable supports were infected apically with Salmonella Typhimurium SL1344 or an invA mutant at MOI 100; infection was followed over early time points (including 1–3 h).

Interpretation: Used to study Salmonella host–pathogen interaction, epithelial invasion and inflammatory signaling in Caco-2.

Limitation: Published condition overlaps the seed MOI/time window but does not validate every value in the requested range; Caco-2 is tumour-derived.

Supporting references

  • PMID 11748167 — Proteolytic inhibition of Salmonella enterica serovar typhimurium-induced activation of the mitogen-activated protein kinases ERK and JNK in cultured human intestinal cells

Disease context

Bacterial enteritis

Bacterial enteric infection / epithelial barrier injury

LITERATURE SUPPORTED
Stimulus
Enteropathogenic Escherichia coli
Experimental context
Caco-2 + EPEC adhesion infection
Stimulus parameters
moi: NOT_REPORTED; exposure duration: NOT_REPORTED

Application purpose

  • Bacterial attachment
  • barrier dysfunction
  • host epithelial response

Evidence summary: Direct evidence for EPEC-associated epithelial barrier alteration in Caco-2 monolayers. Polarized Caco-2 monolayers were exposed to EPEC; transepithelial electrical resistance was measured, with effects reported approximately 6–10 h after bacterial addition. Supports EPEC adhesion/attaching-and-effacing biology and rapid host electrolyte-transport responses in Caco-2. Caco-2 monolayers were infected with wild-type EPEC E2348/69 or a signal-transduction-defective mutant and studied in Ussing chambers.

Interpretation: Used to study EPEC adhesion, barrier/electrolyte transport and epithelial responses in Caco-2.

Limitation: A defined experimental strain and transport endpoint do not represent all bacterial-enteritis mechanisms; Caco-2 is tumour-derived. TEER/barrier response is an application readout and not a disease-fidelity score; timing and strain details differ across studies.

Supporting references

  • PMID 8514377 — Enteropathogenic Escherichia coli decreases the transepithelial electrical resistance of polarized epithelial monolayers
  • PMID 9536944 — Rapid modulation of electrolyte transport in Caco-2 cell monolayers by enteropathogenic Escherichia coli (EPEC) infection

Disease application evidence describes documented experimental use. It does not change model identity, database role, physiological relevance, Disease Fidelity, or overall model ranking.

Physiological Relevance

PR evaluates baseline similarity between a cell model and its intended normal human target-cell reference. It is not overall model quality, a universal ranking, or Disease Fidelity; PR and DF are independent.

Status
FORMAL
PR version
V2
Target reference
enterocytes
Spearman rho
0.707474
Reference rank
23/154
Percentile
85.621%
Delta rho
-0.0680778268
NES
NOT_DEFINED
Gene-set size
921
Method route
DIRECT_TPM_V1_COMPATIBLE

Caveat: Tumour-control role retained; PR does not change database role.

The displayed row is read from the approved PUBLIC_RC1 SQLite release and is not recalculated by the website.

Uncertainty and Limitations

No structured uncertainty flag is recorded.

Key limitations

  • Tumour-control object retained for search and detail but excluded from default non-tumour Browse.

Analysis layers

Physiological Relevance and Disease Fidelity are separate analysis layers. No overall score or ranking is generated by this page.

Physiological Relevance
NOT_ASSESSED
Disease Fidelity
NOT_ASSESSED
Availability
[object Object]

Colon/Intestine V1 scientific context

Coverage
0 adequate · 5 partial · 7 under-covered
Saturation
SATURATION LIMITED BY MODEL ECOSYSTEM
Module state
FROZEN

These module-level statements preserve the frozen scientific limitation context; they do not rank or reclassify this entity.